News

Viewing all tickets

Since today it is possible to query all the tickets over all tracs. An example of such query is shown at GccTicketList. We hope this removes the final barrier to using Trac over all our projects. Cheers, M

Working on the Grid

Last week I, Erik, went to a Grid tutorial at  SARA. The tutorial wasn't really hands-on, but more theoretical and aimed at giving pointers to online help resources.

The [ https://grid.sara.nl/wiki/index.php/Using_the_Grid/ SARA …

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  • Posted: 2010-02-02 14:25 (Updated: 2010-02-02 14:26)
  • Author: erikroos
  • Categories: grid
  • Comments (0)

Planning and adding tickets via Eclipse + Mylyn

So, tickets need to be resolved but you don't want to browse all the time? A solution is around the corner and it is called 'Mylyn'.

With Mylyn you can connect to Trac tickets from within Eclipse. What do you need to do:

1. Install Mylyn and t …

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  • Posted: 2010-01-19 23:23 (Updated: 2010-01-19 23:28)
  • Author: mswertz
  • Categories: (none)
  • Comments (0)

Linking to other tracs

We've setup aliases to easily link to elements in other tracs. You can link to wiki pages, tickets and changesets. Simply prepend the alias for the other trac (currently: molgenis, xgap, animaldb).

Example: 

wiki molgenis:MolgenisGuide

ti ...

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How to add comments section

Hi guys. I've found out how to add a comments section.

Add the following macro to the bottom of your page where you want comments: 

[[AddComment()]]

The appendonly flag enables also not logged in users to comment. 

[[AddComm ...

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  • Posted: 2010-01-18 09:43 (Updated: 2010-01-18 10:32)
  • Author: mswertz
  • Categories: (none)
  • Comments (0)

Welcome to the Genomics Coordination Centre

The center for genomics databases and analysis tools, courses and workshops. See AboutGcc

Genetical Genomics

  • XgapMolgenis - eXtensible Genotype And Phenotype database for GWL and GWA studies
  • RqtlPackage - R package for the analysis of QTL experiments
  • DesignGg - tool for the experimental design of QTL experiments having multiple factors.
  • GwasPipeline - pipeline for genotype quality control and standard analysis
  • GwasPortal - Research platform for LifeLines genetics research

Sequencing

  • SequencingTools - lists tools and manuals we currently have available for Sequencing.
  • SequencingMolgenis - laboratory information system (LIMS) for Illumina sequencing

Mass Spectrometry

Biobanking

  • AnimalDb - for animal observations
  • PhenotypeMolgenis - file format and database for phenotypic data on human and model organisms
  • LocusSpecificMolgenis - A locus specific database for the Col7a1 gene mutations of which cause dystrophic epidermolysis bullosa
  • GenotypeMolgenis - Genetical information management system (aka GIMS), for the genetics laboratory
  • MicroarrayMolgenis - database for microarray gene expression experiments based on the  MAGE-TAB standard

Internships

Bachelor- and masterstudents are invited to apply for an internship at the GCC. An overview of suitable projects is available at the GccInternships page.

Intranet

  • GccMeetings - Notes on our weekly work meetings
  • GccTicketList - Lists assigned and open tickets over all GCC tracs
  • GccProjects - Matrix of ongoing projects and their relationships
  • GccManuals - How to use the software and servers that we have
  • GccLinks - Hyperlinks to papers and websites of interest
  • GccTeam - Members of the group
  • GccCalendar - Meetings etc
  • GccGroup - Our mailing list and group discussion site
  • GccServers - How to connect to our servers

BioAssist

Please edit ;-)

Last modified by mswertz, 03/01/10 21:32:54 (2 weeks ago)